Publications

2017

Publication Title Authors Citation Publication Date
metapath2vec: Scalable Representation Learning for Heterogeneous Networks.

Yuxiao Dong, Nitesh V. Chawla, and Ananthram Swami.

Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), 2017. September, 2017
A Century of Science: Globalization of Scientific Collaborations, Citations, and Innovations.

Yuxiao Dong, Hao Ma, Zhihong Shen, and Kuansan Wang

Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), 2017 September, 2017
A Century of Science: Globalization of Scientific Collaborations, Citations, and Innovations.

Yuxiao Dong, Hao Ma, Zhihong Shen, and Kuansan Wang

Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), 2017 September, 2017
Forward Backward Similarity Search in Knowledge Networks

Baoxu Shi, Lin Yang and Tim Weninger

Knowledge Based Systems, 119(1), 20–31. 2017 September, 2017
ProjE: Embedding Projection for Knowledge Graph Completion

Baoxu Shi and Tim Weninger

Proc. of Association for the Advancement of Artificial Intelligence (AAAI), San Francisco, CA. 2017 September, 2017
Predicting Chronic Heart Failure Using Diagnoses Graphs.

Saurabh Nagrecha, Pamela Bilo Thomas,Keith Feldman, Nitesh V. Chawla

nternational Cross-Domain Conference for Machine Learning and Knowledge Extraction. Springer, Cham, 2017. August, 2017
A Temporal Tree Decomposition for Generating Temporal Graphs.

Corey Pennycuff, Salvador Aguinaga and Tim Weninger

SIGKDD Workshop on Mining and Learning with Graphs, Halifax, Nova Scotia, August, 2017. August, 2017
Rating Effects on Social News Posts and Comments

Maria Glenski and Tim Weninger

ACM Trans. Intelligent Systems and Tech., 2017 August, 2017
Structural Diversity and Homophily: A Study Across More Than One Hundred Big Networks

Yuxiao Dong, Reid A. Johnson, Jian Xu, and Nitesh V. Chawla

Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), 2017 August, 2017
Predicting User-Interactions on Reddit

Maria Glenski, Tim Weninger

IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM), Sydney, August, 2017. August, 2017
Community-based Movie Recommendation via Multimodal Network Learning

Zhou Zhao, Qifan Yang, Hanqing Lu, Tim Weninger, Deng Cai, Xiaofei He and Yueting Zhuang

IEEE Trans. on Multimedia 2017 August, 2017
Inferring Network Structure from Cascades.

Ghonge, S., and Vural D.C

Physical Review E, 96.1 (2017): 012319 July, 2017
Rebuttal to the Letter to the Editor in response to the paper: Proper evaluation of alignment-free network comparison methods

Omer Yaveroglu, Noel Malod-Dognin, Tijana Milenkovic, and Natasa Przulj

Bioinformatics, DOI: 10.1093/bioinformatics/btw388 July, 2017
Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin,

Pietro H. Guzzi and Tijana Milenkovic

Briefings in Bioinformatics, DOI: 10.1093/bib/bbw132 July, 2017
Alignment of dynamic networks, Bioinformatics

Vipin Vijayan, Dominic Critchlow, and Tijana Milenkovic

Proceedings of the 25th International Conference on Intelligent Systems for Molecular Biology and 16th European Conference on Computational Biology (ISMB/ECCB), Prague, Czech Republic, July 21-25, 2017 July, 2017
Iterative control strategies for nonlinear systems.

Forte, G., and D. C. Vural

Physical Review E 96.1 (2017): 012102 July, 2017
Living Diodes: Muscle‐Cell‐Based “Living Diodes

Can U.I., Nagarajan N., Vural D.C., Zorlutuna P.

Advanced Biosystems 1.1-2 (2017). July, 2017
A Tissue Engineered Model of Aging: Interdependence and Cooperative Effects in Failing Tissues

Acun, A., Vural, D.C., Zorlutuna, P.

Scientific Reports 7.1 (2017): 5051 July, 2017
Exploring Compliance: Observations from a Large Scale Fitbit Study

Louis Faust, Rachael Purta, David Hachen, Aaron Striegel, Christian Poellabauer, Omar Lizardo, Nitesh V. Chawla

SocialSens'17 Proceedings of the 2nd International Workshop on Social Sensing April, 2017
Consumers and Curators: Browsing and Voting Patterns on Reddit.

Maria Glenski, Corey Pennycuff, and Tim Weninger

IEEE Trans. on Computational Social Sciences 2017 (preprint) March, 2017

2016

Publication Title Authors Citation Publication Date
A Survey of Tablet Applications for Promoting Successful Aging in Older Adults

Dipanwita Dasgupta, Beenish Chaudhry, Kimberly Green Reeves, and Nitesh V. Chawla.

IEEE Access. 2016 December, 2016
Striations in PageRank-Ordered Matrices.

Corey Pennycuff and Tim Weninger

Social Network Analysis and Mining, 6(1), 1-17, 2017. December, 2016
Physical Activity and Sedentary Behavior Can Modulate the Effect of the PNPLA3 Variant on Childhood NAFLD: A Case-Control Study in a Chinese Population

Shuo Wang, Jieyun Song, Xiaorui Shang, Nitesh V. Chawla, Yide Yang, Xiangrui Meng, Haijun Wang, and Jun Ma

BMC Medical Genetics December, 2016
Deep Learning for Network Analysis: Problems, Approaches and Challenges

Siddharth Pal, Yuxiao Dong, Nitesh V. Chawla, Ananthram Swami, and Ram Ramanathan.

Proceedings of the 35th Annual International Conference for Military Communications (MILCOM) November, 2016
SCOUT: simultaneous time segmentation and community detection in dynamic networks

Yuriy Hulovatyy and Tijana Milenkovic

Nature Scientific Reports, 6, Article number: 37557, DOI:10.1038/srep37557. November, 2016
Connecting the Dots to Infer Followers' Topical Interest on Twitter.

Aastha Nigam, Salvador Aguinaga, and Nitesh V. Chawla.

IEEE International Conference on Behavioral, Economic, and Socio-Cultural Computing (BESC) November, 2016
MedCare: Leveraging Medication Similarity for Disease Prediction

Dipanwita Dasguptaand Nitesh V. Chawla

Proceedings of the IEEE International Conference on Data Science and Advanced Analytics (DSAA) October, 2016
eSeniorCare: Technology for Promoting Well-Being of Older Adults in Independent Living Facilities

Dipanwita Dasgupta, Kimberly Green Reeves, Beenish Chaudhry, Mayra Duarte, and Nitesh V. Chawla

Proceedings of the IEEE International Conference on Health Informatics (ICHI)Proceedings of the IEEE International Conference on Health Informatics (ICHI) October, 2016
Mining the Clinical Narrative: All Text Are Not Equal.

Keith Feldman, Nicholas Hazekamp, and Nitesh V. Chawla

Proceedings of the IEEE International Conference on Health Informatics (ICHI)Proceedings of the IEEE International Conference on Health Informatics (ICHI) October, 2016
Why is Quantification an Interesting Learning Problem?

Pablo González, Jorge Díez, Nitesh V. Chawla, and Juan José del Coz

Progress in Artificial Intelligence September, 2016
Quantifying Decision Making for Data Science: From Data Acquisition to Modeling

Saurabh Nagrecha and Nitesh V Chawla

EPJ Data Science August, 2016
Analysis of Link Formation, Persistence and Dissolution in NetSense Data

Ashwin Bahulkar, Boleslaw K. Szymanski, Omar Lizardo, Yuxiao Dong, Yang Yang, and Nitesh V. Chawla

Proceedings of the 6th Workshop on Social Network Analysis in Applications (SNAA) August, 2016
Insights into Population Health Management Through Disease Diagnoses Networks

Keith Feldman, Gregor Stiglic, Dipanwita Dasgupta, Mark Kricheff, Zoran Obradovic, and Nitesh V. Chawla

Scientific Reports July, 2016
Hearthholds of Mobile Money in Western Kenya

Sibel Kusimba, Yang Yang, and Nitesh V. Chawla

Science Advances, 3(2):266–279,2016 June, 2016
Representing Higher-Order Dependencies in Networks

Jian Xu, Thanuka L. Wickramarathne, and Nitesh V. Chawla

Science Advances, 2(5):e1600028,2016 May, 2016
Successful Aging for Low-Income Older Adults: Towards Design Principles.

Beenish Chaudhry, Kimberly Green Reeves, and Nitesh V. Chawla

Proceedings of the 10th EAI International Conference on Pervasive Computing Technologies for Healthcare (PervasiveHealth) May, 2016
Fact checking in heterogeneous information networks

B. Shi, T. Weninger

WWW '16 Companion Proceedings of the 25th International Conference Companion on World Wide Web April, 2016
Link Prediction in a Semi-bipartite Network for Recommendation

Aastha Nigamand Nitesh V. Chawla

Proceedings of the Asian Conference on Intelligent Information and Database Systems (ACIIDS), pp. 127–135,2016 March, 2016
Can Scientific Impact Be Predicted?

Yuxiao Dong, Reid A. Johnson, and Nitesh V. Chawla

IEEE Transactions on Big Data (TBD), 2(1):18–30,2016 February, 2016

2015

Publication Title Authors Citation Publication Date
Towards Time-Sensitive Truth Discovery in Social Sensing Applications

Chao Huang, Dong Wang, Nitesh Chawla

The 12th IEEE International Conference on Mobile Ad-hoc and Sensor Systems (IEEE MASS 2015) October, 2015
Simultaneous Optimization of Both Node and Edge Conservation in Network Alignment via WAVE

Yihan Sun, Joseph Crawford, Jie Tang, and Tijana Milenkovic

Proceedings of the Workshop on Algorithms in Bioinformatics (WABI), Atlanta, GA September, 2015
Inferring Unusual Crowd Events From Mobile Phone Call Detail Records.

Yuxiao Dong, Fabio Pinelli, Yiannis Gkoufas, Zubair Nabi, Francesco Calabrese, Nitesh V. Chawla

Proc. of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML/PKDD) September, 2015
Predicting Online Video Engagement Using Clickstreams

Everaldo Aguiar, Saurabh Nagrecha and Nitesh Chawla

IEEE International Conference on Data Science and Advanced Analytics (IEEE DSAA) August, 2015
Learning-based design of fault-tolerant cooperative multi-agent systems

J Dai, H Lin

American Control Conference (ACC) August, 2015
Spatial-Temporal Aware Truth Finding in Big Data Social Sensing Applications

Chao Huang, Dong Wang

The 9th IEEE International Conference on Big Data Science and Engineering (BigDataSE 15) August, 2015
The Organization and Control of an Evolving Interdependent Population

D.C. Vural, A. Isakov, L. Mahadevan

Journal of the Royal Society August, 2015
The post-genomic era of biological network alignment

Fazle E. Faisal, Lei Meng, Joseph Crawford, and Tijana Milenkovic

EURASIP Journal on Bioinformatics and Systems Biology August, 2015
Protocols design and uncontrollable topologies construction for multi-agent networks, Automatic Control

Z Ji, H Lin, H Yu

IEEE Transactions August, 2015
Towards Time-Sensitive Truth Discovery in Social Sensing Applications 12th IEEE International Conference on Mobile Ad-hoc and Sensor Systems (IEEE MASS) August, 2015
Collaboration Signatures Reveal Scientific Impact

Yuxiao Dong, Reid Johnson, Nitesh V. Chawla

IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) August, 2015
Collaboration Signatures Reveal Scientific Impact

Yuxiao Dong, Reid Johnson, Nitesh V. Chawla

IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) August, 2015
Recurrent Subgraph Prediction

Saurabh Nagrecha, Nitesh V. Chawla, and Horst Bunke

EEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) August, 2015
CoupledLP: Link Prediction in Coupled Networks

Yuxiao Dong, Jing Zhang, Jie Tang, Nitesh V. Chawla, Bai Wang

Proc. of the 21st ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD) August, 2015
Exploring the structure and function of temporal networks with dynamic graphlets, Bioinformatics

Yuriy Hulovatyy, Huili Chen, and Tijana Milenkovic

Bioinformatics July, 2015
Similarity-Based Visualization of Large Image Collections

Chaoli Wang, John P. Reese, Huan Zhang, Jun Tao, Yi Gu, Jun Ma, and Robert J. Nemiroff

Information Visualization July, 2015
Extraction of Energy Information from Analog Meters Using Image Processing

Yachen Tang, Chee-Wooi Ten, Chaoli Wang, and Gordon Parker

IEEE Transactions on Smart Grid July, 2015
VIGvisual: A Visualization Tool for the Vigenère Cipher

Can Li, Jun Ma, Jun Tao, Jean Mayo, Ching-Kuang Shene, Melissa Keranen, and Chaoli Wang

Proceedings of ACM Conference on Innovation and Technology in Computer Science Education, Vilnius, Lithuania July, 2015
RBACvisual: A Visualization Tool for Teaching Access Control Using Role-Based Access Control

Man Wang, Jean Mayo, Ching-Kuang Shene, Thomas Lake, Steven M. Carr, and Chaoli Wang

Proceedings of ACM Conference on Innovation and Technology in Computer Science Education, Vilnius, Lithuania July, 2015
Plasmodium falciparum genetic crosses in a humanized mouse model

Vaughan AM, Pinapati RS, Cheeseman IH, Camargo N, Fishbaugher M, Checkley LA, Nair S, Hutyra CA, Nosten FH, Anderson TJ, Ferdig MT, Kappe SH.

Nat Methods July, 2015
Does Medical School Training Relate to Practice? Evidence from Big Data

Keith Feldman and Nitesh V. Chawla

Big Data Journal June, 2015
Fair Evaluation of Global Network Aligners

Joseph Crawford, Yihan Sun, and Tijana Milenkovic

Algorithms for Molecular Biology June, 2015
SHAvisual: A Visualization Tool for Secure Hash Algorithm

Jun Ma, Jun Tao, Melissa Keranen, Jean Mayo, Ching-Kuang Shene, and Chaoli Wang

Proceedings of American Society for Engineering Education Annual Conference, Seattle, WA June, 2015
A Survey of Graph-Based Representations and Techniques for Scientific Visualization

Chaoli Wang

Eurographics Conference on Visualization - State of The Art Reports, Cagliari, Italy May, 2015
Optimizing Classifiers for Hypothetical Scenarios

R. Johnson, T. Raeder, and N. V. Chawla

The 19th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD) May, 2015
Social Sensing: Building Reliable Systems on Unreliable Data

Dong Wang, Tarek Abdelzaher, and Lance Kaplan

1st Edition, Elsevier April, 2015
Reliable Social Sensing with Physical Constraints: Analytic Bounds and Performance Evaluation

Dong Wang, Tarek Abdelzaher, Lance Kaplan, Raghu Ganti, Shaohan Hu and Hengchang Liu

Journal of Real-Time Systems April, 2015
Functional analysis of sirtuin genes in multiple Plasmodium falciparum strains

Merrick CJ, Jiang RH, Skillman KM, Samarakoon U, Moore RM, Dzikowski R, Ferdig MT, Duraisingh MT.

PLoS One March, 2015
Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia

Takala-Harrison S, Jacob CG, Arze C, Cummings MP, Silva JC, Dondorp AM, Fukuda MM, Hien TT, Mayxay M, Noedl H, Nosten F, Kyaw MP, Nhien NT, Imwong M, Bethell D, Se Y, Lon C, Tyner SD, Saunders DL, Ariey F, Mercereau-Puijalon O, Menard D, Newton PN, Khanth

J Infect Dis March, 2015
MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation

Vipin Vijayan, Vikram Saraph, and Tijana Milenkovic

Bioinformatics March, 2015
Proper Evaluation of Alignment-Free Network Comparison Methods

Omer Yaveroglu, Tijana Milenkovic, and Natasa Przulj

Bioinformatics March, 2015
Qualitatively exploring electronic portfolios: a text mining approach to measuring student emotion as an early warning indicator

Frederick Nwanganga, Everaldo Aguiar, G Alex Ambrose, Victoria Goodrich, and Nitesh V Chawla

Fifth International Conference on Learning Analytics And Knowledge (LAK) February, 2015
Will This Paper Increase Your h-index? Scientific Impact Prediction

Y. Dong, R. Johnson, and N. V. Chawla

Proceedings of 7th International Conference on Web Science and Data Mining (ACM WSDM) February, 2015
Inferring social status and rich club effects in enterprise communication networks

Y. Dong, J. Tang, and N. V. Chawla

PLOS One February, 2015
iGraph: A Graph-Based Technique for Visual Analytics of Image and Text Collections

Yi Gu, Chaoli Wang, Jun Ma, Robert J. Nemiroff, and David L. Kao

Proceedings of IS&T/SPIE Conference on Visualization and Data Analysis, San Francisco, CA February, 2015
Predicting Node Degree Centrality with Node Prominence Profile

Y. Yang, Y. Dong, and N. V. Chawla

Scientific Reports February, 2015

2014

Publication Title Authors Citation Publication Date
Characterization of the Anopheles gambiae octopamine receptor and discovery of potential agonists and antagonists using a combined computational-experimental approach Malaria Journal November, 2014
Admission Duration Model for Infant Treatment (ADMIT)

K. Feldman and N. V. Chawla

Proceeding of IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM) November, 2014
Evaluating link prediction methods

Y. Yang, R. Lichtenwalter and N.V. Chawla

Knowledge and Information Systems Journal October, 2014
Global Network Alignment In The Context Of Aging

Fazle E. Faisal, Han Zhao, and Tijana Milenkovic

IEEE/ACM Transactions on Computational Biology and Bioinformatics September, 2014
Improving identification of key players in aging via network de-noising

Boyoung Yoo, Huili Chen, Fazle E. Faisal, and Tijana Milenkovic

In Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Health Informatics (ACM BCB) September, 2014
Improving Management of Aquatic Invasions by Integrating Shipping Network, Ecological and Environmental Data: Data Mining for Social Good

J Xu, TL Wickramarathne, NV Chawla, E Grey, K Steinhaeuser, RP Keller, JM Drake and DM Lodge

Proc. of the 20th ACM SIGKDD Conference on Knowledge Discovery and Data mining (KDD) August, 2014
Mission Accomplished: An Introduction to Formal Methods in Mobile Robot Motion Planning and Control

H. Lin

Unmanned Systems August, 2014
Engagement vs Performance: Using Electronic Portfolios to Predict First Semester Engineering Student Persistence

E. Aguiar, G. Alex Ambrose, N. V. Chawla, V. Goodrich, and J. Brockman

Journal of Learning Analytics August, 2014
A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity

Jacob CG, Tan JC, Miller BA, Tan A, Takala-Harrison S, Ferdig MT, Plowe CV

BMC Genomics August, 2014
Networks' characteristics are important for systems biology

Rider AK, Milenković T, Siwo GH, Pinapati RS, Emrich SJ, Ferdig MT, Chawla NV

Network Science August, 2014
A supervised learning approach to the ensemble clustering of genes

Rider AK, Siwo G, Emrich SJ, Ferdig MT, Chawla NV

Int J Data Min Bioinform August, 2014
Automatic synthesis of cooperative multi-agent systems

J Dai, H Lin

Decision and Control (CDC) August, 2014
Hybrid Dynamical Systems: An Introduction to Control and Verification

H. Lin and P. J. Antsaklis

Foundations and Trends® in Systems and Control August, 2014
Inferring User Demographics and Social Strategies in Mobile Social Networks

Yuxiao Dong, Yang Yang, Yang Yang, Jie Tang, and Nitesh V. Chawla

Proc. of the 20th ACM SIGKDD Conference on Knowledge Discovery and Data mining (KDD) August, 2014
Inferring User Demographics and Social Strategies in Mobile Social Networks

Yuxiao Dong, Yang Yang, Jie Tang, Yang Yang, Nitesh V. Chawla

August, 2014
Scaling Personalized Healthcare with Big Data

Keith Feldman and Nitesh V. Chawla

2nd International Conference on Big Data Analytics in Healthcare (BDAH'14) July, 2014
Disease and Medication Networks: An Insight into Disease-Drug Interactions

Dipanwita Dasgupta and Nitesh V. Chawla

2nd International Conference on Big Data Analytics in Healthcare (BDAH'14) July, 2014
HDDT to avoid instances propagation in unbalanced and evolving data streams

Andrea Dal Pozzolo, Reid Johnson, Olivier Caelen, Serge Waterschoot, Nitesh V Chawla and Gianluca Bontempi

IEEE IJCNN July, 2014
MAGNA: Maximizing Accuracy in Global Network Alignment

Vikram Saraph, Tijana Milenković

Bioinformatics, DOI: 10.1093/bioinformatics/btu409, in press June, 2014
A HECT ubiquitin-protein ligase as a novel candidate gene for altered quinine and quinidine responses in Plasmodium falciparum

Sanchez CP, Liu CH, Mayer S, Nurhasanah A, Cyrklaff M, Mu J, Ferdig MT, Stein WD, Lanzer M

PLoS Genet May, 2014
Expression of the essential Kinase PfCDPK1 from Plasmodium falciparum in Toxoplasma gondii facilitates the discovery of novel antimalarial drugs

Gaji RY, Checkley L, Reese ML, Ferdig MT, Arrizabalaga G

Antimicrob Agents Chemother May, 2014
Integrated Care Framework for Successful Aging

Dipanwita Dasgupta, Keith Feldman, Disha Waghray, W.A. Mikels-Carrasco, Patty Willaert, Debra A. Raybold, and Nitesh V. Chawla

IEEE-EMBS International Conferences on Biomedical and Health Informatics April, 2014
Convergence Analysis of Iterated Belief Revision in Complex Fusion Environments

TL Wickramarathne, Kamal Premaratne, Manohar Murthi and Nitesh V. Chawla

IEEE Journal of Selected Topics in Signal Processingn April, 2014
Convergence Analysis of Iterated Belief Revision inComplex Fusion Environments

WICKRAMARATHNE, T; Premaratne, K. ; Murthi, M. ; Chawla, N

IEEE April, 2014
Engagement vs Performance: Using Electronic Portfolios to Predict First Semester Engineering Student Retention

Everaldo Aguiar, Nitesh V. Chawla, Jay Brockman, G. Alex Ambrose, Victoria Goodrich

Fourth International Conference on Learning Analytics and Knowledge (LAK) March, 2014
Quinine dimers are potent inhibitors of the Plasmodium falciparum chloroquine resistance transporter and are active against quinoline-resistant P. falciparum.

Hrycyna CA, Summers RL, Lehane AM, Pires MM, Namanja H, Bohn K, Kuriakose J, Ferdig M, Henrich PP, Fidock DA, Kirk K, Chmielewski J, Martin RE

ACS Chem Biol March, 2014
Revealing Missing Parts of the Interactome via Link Prediction

Yuriy Hulovatyy, Ryan W. Solava, Tijana Milenković

PLOS ONE, 9(3): e90073 March, 2014
Systematic Dynamic and Heterogeneous Analysis of Rich Social Network Data

Lei Meng, Tijana Milenkovic, and Aaron Striegel

Springer-Verlag March, 2014
Dynamic networks reveal key players in aging

Fazle E. Faisal and Tijana Milenkovic

Bioinformatics, 30(12): 1721-1729. February, 2014
Networks’ Characteristics Matter for Systems Biology

Andrew K. Rider, Tijana Milenkovic, Geoffrey H. Siwo, Richard S. Pinapati, Scott J. Emrich, Michael T. Ferdig, Nitesh V. Chawla

February, 2014
Predicting functional and regulatory divergence of a drug resistance transporter gene in the human malaria parasite

Siwo GH, Tan A, Button-Simons KA, Samarakoon U, Checkley L, Pinapati RS, Ferdig MT

BMC Genomics February, 2014
Vertex collocation profiles: theory, computation, and results

Ryan Lichtenwalter and Nitesh V. Chawla

SpringerPlus 2014, 3:116 February, 2014
Metabolic QTL analysis links chloroquine resistance in Plasmodium falciparum to impaired hemoglobin catabolism

Lewis IA, Wacker M, Olszewski KL, Cobbold SA, Baska KS, Tan A, Ferdig MT, Llinás M

PLoS Genet January, 2014

2013

Publication Title Authors Citation Publication Date
A Predictive Network Model of Cerebral Cortical Connectivity Based on a Distance Rule

M. Ercsey-Ravasz, N.T. Markov, C. Lamy, D.C. Van Essen, K. Knoblauch, Z. Toroczkai, H. Kennedy

Neuron Volume 80, Issue 1, 2 October 2013, Pages 184–197 December, 2013
Modeling roadway network traffic using a radiation model based on temporal ranges

Y. Ren, M. Ercsey-Ravasz, P. Wang, M.C. Gonzalez, Z. Toroczkai

Submitted. December, 2013
Link Prediction in Human Mobility Networks

Yang Yang, Nitesh V. Chawla, Prithwish Basu, Bhaskar Prabhala, Thomas La Porta

ACM/IEEE ASONAM'13 December, 2013
Comparison of Gene Co-expression Networks and Bayesian Networks

Saurabh Nagrecha, Pawan J. Lingras, and Nitesh V. Chawla

Intelligent Information and Database Systems. Springer Berlin Heidelberg, 2013. 507-516. December, 2013
Network Analysis Improves Interpretation of Affective Physiological Data

Yuriy Hulovatyy, Sidney D'Mello, Rafael A. Calvo, and Tijana Milenkovic

Journal of Complex Networks and IEEE Proceedings December, 2013
Agent-Directed Simulation (ADS) Symposium, San Diego, CA, April 7-10, 2013.

Nathan Regola and Nitesh V. Chawla

Journal of Medical Internet Research, 15(3):e63. (JMIR) December, 2013
The Coevolution of Communication Networks and Drinking Behaviors

Wang, Cheng, David S. Hachen, and Omar Lizardo

Wang, Cheng, David S. Hachen, and Omar Lizardo. "The Coevolution of Communication Networks and Drinking Behaviors." 2013 AAAI Fall Symposium Series. 2013. November, 2013
Analysis of the Accelerated Weighted Ensemble methodology

Ronan Costaouec, Haoyun Feng, Jesus A. Izaguirre, Eric Darve

DYNAMICAL SYSTEMS (2013): 171-181. November, 2013
Lessons learned from the Netsense smartphone study

Striegel A., Liu S., Meng, L., Poellabauer, C. , Hachen, D , and Lizardo, O.

Striegel, Aaron, et al. "Lessons learned from the netsense smartphone study." Proceedings of the 5th ACM workshop on HotPlanet. ACM, 2013. October, 2013
The Need to Consider Hardware Selection when Designing Big Data Applications Supported by Metadata

Nathan Regola, David Cieslak, Nitesh V. Chawla

Big Data Management, Technologies, and Applications October, 2013
Classifier Evaluation with Missing Negative Class Labels

Andrew K. Rider, Reid A. Johnson, Darcy A. Davis, T. Ryan Hoens, Nitesh V. Chawla

Advances in Intelligent Data Analysis XII Lecture Notes in Computer Science Volume 8207, 2013, pp 380-391 October, 2013
Why data coherence and quality is critical for understanding interareal cortical networks

H. Kennedy, K. Knoblauch and Z. Toroczkai

NeuroImage Volume 80, 15 October 2013, Pages 37–45 October, 2013
Bringing Big Data to Personalized Healthcare: A Patient-Centered Framework

Nitesh V. Chawla and Darcy Davis

Journal of General Internal Medicine September 2013, Volume 28, Issue 3 Supplement, pp 660-665 September, 2013
An Ensemble Topic Model for Sharing Healthcare Data and Predicting Disease Risk

Andrew Rider and Nitesh V. Chawla

Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics. ACM, 2013. September, 2013
How Long Will She Call Me? Distribution, Social Theory and Duration Prediction

Yuxiao Dong, Jie Tang, Tiancheng Lou, Bin Wu, Nitesh V. Chawla

Machine Learning and Knowledge Discovery in Databases Lecture Notes in Computer Science Volume 8189, 2013, pp 16-31 September, 2013
Supervised Methods for Multi-Relational Link Prediction

Darcy Davis, Ryan Lichtenwalter, Nitesh V. Chawla

Social Network Analysis and Mining (2013): 1-15. June, 2013
Imbalanced Datasets: From Sampling to Classifiers

T. Ryan Hoens and Nitesh V. Chawla

Imbalanced Learning: Foundations, Algorithms, and Applications, ed: Haibo He, Yunqian Ma, John Wiley & Sons, 2013, ISBN: 1118646207, 9781118646205, pgs 43-60. May, 2013
Identification of novel arthropod vector G protein-coupled receptors

Ronald J. Nowling, Jenica L. Abrudan, Douglas A. Shoue, Badi Abdul-Wahid, Mariha Wadsworth, Gwen Stayback, Frank H. Collins, Mary Ann McDowell, and Jesus A. Izaguirre

Parasites & vectors 6.1 (2013): 150. May, 2013
Computational Intelligent Data Analysis for Sustainable Development

Yu, Ting, Nitesh V. Chawla, and Simeon J. Simoff

Computational Intelligent Data Analysis for Sustainable Development. CRC Press, 2013. April, 2013
Multi-hop Communications in a Swarm of UAVs

Rachael Purta, Saurabh Nagrecha, Gregory Madey

Proceedings of the 2013 Symposium on Agent Directed Simulation (ADS'13/SpringSim 2013). Society for Computer Simulation International, San Diego, CA. 2013. April, 2013
The role of long-range connections on the specificity of the macaque interareal cortical network

N.T. Markov, M. Ercsey-Ravasz, C. Lamy, A.R. Ribeiro Gomes, L. Magrou, P. Misery, P. Giroud, P. Barone, C. Dehay, Z. Toroczkai, K. Knoblauch, D.C. Van Essen, H. Kennedy

PNAS 2013 110 (13) 5187-5192; published ahead of print March 11, 2013, doi:10.1073/pnas.1218972110 March, 2013
Storing and Using Health Data in a Virtual Private Cloud

Nathan Regola, Nitesh V. Chawla

J Med Internet Res 2013;15(3):e63 March, 2013
Perspective on Measurement Metrics for Community Detection Algorithms

Yang Yang, Yizhou Sun, Saurav Pandit, Nitesh V. Chawla,

Mining Social Networks and Security Informatics. Springer Netherlands, 2013. 227-242 January, 2013

2012

Publication Title Authors Citation Publication Date
Addressing Challenges in Prescripition Management

Robert Thompson and Nitesh V. Chawla

24th Annual Conference of the Production and Operations Management Society (POMS) December, 2012
Maximizing Information Spread Through Influence Structures in Social Networks

Saurav Pandit, Yang Yang, and Nitesh V. Chawla

Data Mining Workshops (ICDMW), 2012 IEEE 12th International Conference on. IEEE, 2012. December, 2012
Link Prediction: A Primer

Nitesh V. Chawla and Yang Yang

in Reda Alhajj and Jon Rokne (eds.), Encyclopedia of Social Network Analysis and Mining by Springer, 2012. December, 2012
Predicting Links in Multi-relational and Heterogeneous Networks

Yang Yang, Nitesh V. Chawla, Yizhou Sun, and Jiawei Han

2012 IEEE 12th International Conference on Data Mining December, 2012
Link Prediction and Recommendation across Heterogeneous Social Networks

Yuxiao Dong, Jie Tang, Sen Wu, Jilei Tian, Nitesh V. Chawla, Jinghai Rao, and Huanhuan Cao

Data Mining (ICDM), 2012 IEEE 12th International Conference on. IEEE, 2012. December, 2012
A Supervised Learning Approach to the Ensemble Clustering of Genes

Andrew K. Rider, Geoffrey Siwo, Scott J. Emrich, Michael T. Ferdig, Nitesh V. Chawla

International Journal of Data Mining and Bioinformatics December, 2012
Building Decision Trees for the Multi-class Imbalance Problem

T. Ryan Hoens, Qi Aian, Nitesh V. Chawla, and Zhi-Hua Zhou

Advances in Knowledge Discovery and Data Mining Lecture Notes in Computer Science Volume 7301, 2012, pp 122-134 December, 2012
Long Timestep Molecular Dynamics on the Graphical Processing Unit

James C. Sweet, Ronald J. Nowling, Trevor Cickovski, Christopher R. Sweet, Vijay S. Pande, and Jesús A. Izaguirre.

Submitted. October, 2012
The Chaos within Sudoku

Mária Ercsey-Ravasz & Zoltán Toroczkai

"The chaos within Sudoku." Scientific reports 2 (2012) October, 2012
A dyadic reciprocity index for repeated interaction networks

Wang, C., Lizardo, O, Hachen, D., Strathman, A., Toroczkai, Z., Chawla, N.

WANG, CHENG, et al. "A dyadic reciprocity index for repeated interaction networks." Network Science 1.01 (2013): 31-48. October, 2012
Folding proteins at 500 ns/hour with Work Queue

Badi Abdul-Wahid, Li Yu, Dinesh Rajan, Haoyun Feng, Eric Darve, Douglas Thain, Jesus A. Izaguirre

E-Science (e-Science), 2012 IEEE 8th International Conference on. IEEE, 2012. October, 2012
Species distribution modeling and prediction: A class imbalance problem

Reid A. Johnson, Nitesh V. Chawla, and Jessica J. Hellmann

Intelligent Data Understanding (CIDU), 2012 Conference on. IEEE, 2012. October, 2012
Citizen Engineering: Evolving OSS Practices for Engineering Design and Analysis

Zhi Zhai, Tracy Kijewski-Correa, Ashan Kareem, David Hachen, Greg Madey

Zhai, Zhi, et al. "Citizen Engineering: Evolving OSS Practices to Engineering Design and Analysis." Open Source Systems: Long-Term Sustainability. Springer Berlin Heidelberg, 2012. 61-77. September, 2012
A weighted and directed interareal connectivity matrix for macaque cerebral cortex

N. T. Markov, M. Ercsey-Ravasz, A.R. Ribeiro Gomes, C. Lamy, J. Vezoli, L. Magrou, P. Misery, A. Falchier, R. Quilodran, J. Sallet, M. A. Gariel,

R. Gamanut, C. Huissoud, S. Clavagnier, P. Giroud, D. Sappey-Marinier, P. Barone, C. Dehay, Z. Toroczkai, K. Knoblauch, D. C. Van Essen, H. Kennedy

Cereb. Cortex (2012) doi: 10.1093/cercor/bhs270 September, 2012
Graphlet-based edge clustering reveals pathogen-interacting proteins

Ryan W. Solava, Ryan P. Michaels, and Tijana Milenkovic

Bioinformatics 28.18 (2012): i480-i486. September, 2012
Multivariate and Multiscale Dependence in the Global Climate System Revealed Through Complex Networks

Karsten Steinhaeuser, Auroop R. Ganguly, Nitesh V. Chawla

Climate dynamics 39.3-4 (2012): 889-895. August, 2012
Continuous-time neural networks without local traps for solving Boolean satisfiability

B. Molnar, M. Ercsey-Ravasz and Z. Toroczkai

Cellular Nanoscale Networks and Their Applications (CNNA), 2012 13th International Workshop on. IEEE, 2012. August, 2012
Link Prediction: Fair and Effective Evaluation

Ryan Lichtenwalter and Nitesh V. Chawla

Advances in Social Networks Analysis and Mining (ASONAM), 2012 IEEE/ACM International Conference on. IEEE, 2012 August, 2012
Haiti Earthquake Photo Tagging: Lessons on Crowdsourcing In-Depth Image Classifications

Zhi Zhai, Kijewski-Correa, T. ; Hachen, D. ; Madey, G.

Zhai, Zhi, et al. "Haiti earthquake photo tagging: Lessons on crowdsourcing in-depth image classifications." ICDIM. 2012. August, 2012
Learning in non-stationary environments with class imbalance

T. Ryan Hoens and Nitesh V. Chawla

Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining. ACM, 2012. August, 2012
Range-limited centrality measures in complex networks

Mária Ercsey-Ravasz, Ryan N. Lichtenwalter, Nitesh V. Chawla and Zoltán Toroczkai

Physical Review E 85.6 (2012): 066103. June, 2012
The Constraints of Magnetic versus Flash Disk Capabilities in Big Data Analysis

Nathan Regola, David A. Cieslak and Nitesh V. Chawla

Proceedings of the 2nd Workshop on Architectures and Systems for Big Data. ACM, 2012. June, 2012
Complexity of the International Agro-Food Trade Network and Its Impact on Food Safety

Mária Ercsey-Ravasz, Zoltán Toroczkai, Zoltán Lakner, József Baranyi

PloS one 7.5 (2012): e37810. May, 2012
Vertex Collocation Profiles: Subgraph Counting for Link Analysis and Prediction

Ryan N. Lichtenwalter and Nitesh V. Chawla

Proceedings of the 21st international conference on World Wide Web. ACM, 2012. April, 2012
Learning from streaming data with concept drift and imbalance: an overview

T. Ryan Hoens, Robi Polikar, Nitesh V. Chawla

Progress in Artificial Intelligence 1.1 (2012): 89-101. April, 2012
When Will It Happen? Relationship Prediction in Heterogeneous Information Networks

Yizhou Sun, Jiawei Han, Charu C. Aggarwal, and Nitesh V. Chawla

Proceedings of the fifth ACM international conference on Web search and data mining. ACM, 2012. February, 2012
Constructing and sampling directed graphs with given degree sequences

H. Kim, C.I. Del Genio, K.E. Bassler and Z. Toroczkai

New J. Phys. 14 023012 doi:10.1088/1367-2630/14/2/023012 February, 2012
Citizen Engineering: Methods for ‘Crowdsourcing’ Highly Trustworthy Results

Zhi, Z., Hachen, D., Kijewski-Correa, T. Shen, F. and Madey, G.

Zhai, Zhi, et al. "Citizen Engineering: Methods for." System Science (HICSS), 2012 45th Hawaii International Conference on. IEEE, 2012. January, 2012

2011

Publication Title Authors Citation Publication Date
An Exploration of Climate Data Using Complex Networks

Karsten Steinhaeuser, Nitesh V. Chawla and Auroop R. Ganguly

ACM SIGKDD Explorations, 11(2) December, 2011
The tribal networks of the cerebral cortex

N.T. Markov, M.M. Ercsey-Ravasz, M.A. Gariel, C. Dehay, K. Knoblauch, Z. Toroczkai and H. Kennedy

Cerebral plasticity (2011): 275-290. December, 2011
String Method with Collective Variables from Instantaneous Normal Modes

Santanu Chatterjee, Christopher R. Sweet, and Jesus A. Izaguirre

December, 2011
Optimization hardness as transient chaos in an analog approach to constraint satisfaction

Mária Ercsey-Ravasz & Zoltán Toroczkai

Nature Physics 7.12 (2011): 966-970. October, 2011
Predictors of short-term decay of cell phone contacts in a large scale communication network

Troy Raeder, Omar Lizardo, David Hachen, Nitesh V. Chawla

Raeder, Troy, et al. "Predictors of short-term decay of cell phone contacts in a large scale communication network." Social Networks 33.4 (2011): 245-257. October, 2011
Weighted reciprocity in human communication networks

Cheng Wang, Anthony Strathman, Omar Lizardo, David Hachen, Zoltan Toroczkai, Nitesh V. Chawla

arXiv:1108.2822v5 [cs.SI] September, 2011
Cultural correlates of ego-network closure

Omar Lizardo

Sociological Perspectives 54.3 (2011): 479-487. September, 2011
Dominating biological networks

Tijana Milenković, Vesna Memišević, Anthony Bonato, Nataša Pržulj

PloS one 6.8 (2011): e23016. August, 2011
Exploring and Exploiting Disease Interactions from Multi-Relational Gene and Phenotype Networks

Darcy A. Davis, Nitesh V. Chawla

PloS one 6.7 (2011): e22670. July, 2011
Multi-relational Link Prediction in Heterogeneous Information Networks

Darcy Davis, Ryan N. Lichtenwalter, and Nitesh V. Chawla

Advances in Social Networks Analysis and Mining (ASONAM), 2011 International Conference on. IEEE, 2011. July, 2011
Online Work Motivation: An Experiment of Instrumental and Moral Incentives

Zack Kertcher and David Hachen

The 23rd Annual Meeting of the Society for the Advancement of Socio-Economics. 2011. June, 2011
Detecting Communities in Time-evolving Proximity Networks

Suarav Pandit, Yang Yang, Vikas Kawadia, Sameet Sreenivasan, and Nitesh V. Chawla

Network Science Workshop (NSW), 2011 IEEE. IEEE, 2011. June, 2011
An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations

John C Tan, Becky A Miller, Asako Tan, Jigar J Patel, Ian H Cheeseman, Tim JC Anderson, Magnus Manske, Gareth Maslen, Dominic P Kwiatkowski and Michael T Ferdig

Genome Biology 12.4 (2011): R35. April, 2011
Empirical Comparison of Correlation Measures and Pruning Levels in Complex Networks Representing the Global Climate System

Alex Pelan, Karsten Steinhaeuser, Nitesh V. Chawla, Dilkushi A. de Alwis Pitts and Auroop R. Ganguly

Computational Intelligence and Data Mining (CIDM), 2011 IEEE Symposium on. IEEE, 2011. April, 2011
High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum

Upeka Samarakoon, Allison Regier, Asako Tan, Brian A Desany, Brendan Collins, John C Tan, Scott J Emrich and Michael T Ferdig

BMC genomics 12.1 (2011): 116. February, 2011
Design, synthesis, and study of a mycobactin-artemisinin conjugate that has selective and potent activity against tuberculosis and malaria

Marvin J. Miller, Andrew J. Walz, Helen Zhu, Chunrui Wu, Garrett Moraski, Ute Möllmann, Esther M. Tristani, Alvin L. Crumbliss, Michael T. Ferdig, Lisa Checkley, Rachel L. Edwards, and Helena I. Boshoff

Journal of the American Chemical Society 133.7 (2011): 2076-2079. January, 2011

2010

Publication Title Authors Citation Publication Date
A supervised learning approach to the unsupervised clustering of genes

Rider, A., Siwo, G., Emrich, S., Ferdig, M., Chawla, N.V.

Rider, Andrew, et al. "A supervised learning approach to the unsupervised clustering of genes." Bioinformatics and Biomedicine (BIBM), 2010 IEEE International Conference on. IEEE, 2010. December, 2010
Modeling the conformational ensembles of NMR relaxation dispersion: molecular dynamics study of slow functional motions in the Pin1-WW domain

Faruck Morcos, Santanu Chatterjee, Christopher L. McClendon, Paul R. Brenner, Roberto López-Rendón, John Zintsmaster,

Maria Ercsey-Ravasz, Christopher R. Sweet, Matthew P. Jacobson, Jeffrey W. Peng, Jesús A. Izaguirre

Morcos, Faruck, et al. "Modeling conformational ensembles of slow functional motions in Pin1-WW." PLoS computational biology 6.12 (2010): e1001015. December, 2010
Network discovery by generalized random walks

A. Asztalos and Z. Toroczkai

EPL (Europhysics Letters) 92.5 (2010): 50008. December, 2010
Consequences of Variability in Classifier Performance Estimates

Troy Raeder, T. Ryan Hoens, and Nitesh V. Chawla

Data Mining (ICDM), 2010 IEEE 10th International Conference on. IEEE, 2010. December, 2010
Complex Networks as a Unified Framework for Descriptive Analysis and Predictive Modeling in Climate Science

Karsten Steinhaeuser, Nitesh V. Chawla, and Auroop R. Ganguly

Statistical Analysis and Data Mining 4.5 (2011): 497-511. December, 2010
Reliable Medical Recommendation Systems with Patient Privacy

T. Ryan Hoens, Marina Blanton, and Nitesh V. Chawla

Proceedings of the 1st ACM International Health Informatics Symposium. ACM, 2010. November, 2010
Reliable Medical Recommendation Systems with Patient Privacy

T. Ryan Hoens, Marina Blanton, Nitesh V. Chawla

Proceedings of the 1st ACM International Health Informatics Symposium. ACM, 2010. November, 2010
Weight Consistency Specifies Regularities of Macaque Cortical Networks

N.T. Markov, P. Misery, A. Falchier, C. Lamy, J. Vezoli, R. Quilodran, P. Giroud, M.A. Gariel, M. Ercsey-Ravasz, L.J. Pilaz, C. Huissoud, P. Barone, C. Dehay, Z. Toroczkai, D.C. Van Essen, H. Kennedy, K. Knoblauch

Cerebral Cortex 21.6 (2011): 1254-1272. November, 2010
Variable numbers of tandem repeats in Plasmodium falciparum genes

John C. Tan, Asako Tan, Lisa Checkley, Caroline M. Honsa, Michael T. Ferdig

Journal of molecular evolution 71.4 (2010): 268-278. October, 2010
Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum

Heather B Reilly Ayala, Mark A Wacker, Geoffrey Siwo and Michael T Ferdig

BMC genomics 11.1 (2010): 577. October, 2010
A Statistical Approach to Finding Overlooked Genetic Associations

Andrew K Rider, Geoffrey Siwo, Nitesh V Chawla, Michael Ferdig and Scott J Emrich

Rider, Andrew, et al. "A statistical approach to finding overlooked genetic associations." BMC bioinformatics 11.1 (2010): 526. October, 2010
A Private and Reliable Recommendation System for Social Networks

T. Ryan Hoens, Marina Blanton, and Nitesh V. Chawla

Social Computing (SocialCom), 2010 IEEE Second International Conference on. IEEE, 2010. August, 2010
Chloroquine susceptibility and reversibility in a Plasmodium falciparum genetic cross

Jigar J. Patel, Drew Thacker, John C. Tan, Perri Pleeter, Lisa Checkley, Joseph M. Gonzales, Bingbing Deng, Paul D. Roepe, Roland A. Cooper, Michael T. Ferdig

Molecular microbiology 78.3 (2010): 770-787. August, 2010
Viral organization of human proteins

Stefan Wuchty, Geoffrey Siwo, and Michael T. Ferdig

PloS one 5.8 (2010): e11796. August, 2010
Centrality scaling in large networks

Mária Ercsey-Ravasz & Zoltán Toroczkai

Physical review letters 105.3 (2010): 038701 July, 2010
New Perspectives and Methods in Link Prediction

Ryan N. Lichtenwalter, Jake T. Lussier, Nitesh V. Chawla

Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining. ACM, 2010. July, 2010
Privacy-Preserving Network Aggregation

Troy Raeder, Marina Blanton, Nitesh V. Chawla, Keith Frikken

Advances in Knowledge Discovery and Data Mining. Springer Berlin Heidelberg, 2010. 198-207. June, 2010
Can cultural worldviews influence network composition?

Stephen Vaisey, and Omar Lizardo

Social Forces 88.4 (2010): 1595-1618. June, 2010
Multi-Dimensional Urbanization Processes and its Effects on the Extent and Character of Social Ties: A Case Study

Cheng Wang

NetSCI2010, Cambridge, MA, May 2010 May, 2010
Time to CARE: A Collaborative Filtering Engine for Practical Disease Prediction

Darcy A. Davis, Nitesh V. Chawla, Nicholas A. Christakis, Albert-László Barabási

Data Mining and Knowledge Discovery 20.3 (2010): 388-415. May, 2010
A simple Havel-Hakimi type algorithm to realize graphical degree sequences of directed graphs

Péter L. Erdos, István Miklós, and Zoltán Toroczkai

Electronic Journal of Combinatorics 17.1 (2010): R66. April, 2010
Efficient and exact sampling of simple graphs with given arbitrary degree sequence

Charo I. Del Genio, Hyunju Kim, Zoltán Toroczkai, Kevin E. Bassler

PloS one 5.4 (2010): e10012. April, 2010
Skills, toolkits, contexts and institutions: clarifying the relationship between different approaches to cognition in cultural sociology

Omar Lizardo, Michael Strand

Poetics 38.2 (2010): 205-228. April, 2010
User Generated Content Consumption and Social Networking in Knowledge-Sharing OSNs

Jake T. Lussier, Troy Raeder, Nitesh V. Chawla

Advances in Social Computing. Springer Berlin Heidelberg, 2010. 228-237. March, 2010
Belief Propagation Estimation of Protein and Domain Interactions using the Sum-Product Algorithm

Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale Kaiser, and Jesús A. Izaguirre

Information Theory, IEEE Transactions on 56.2 (2010): 742-755. February, 2010
Estimation of Protein and Domain Interactions in the Switching Motility System of Myxococcus xanthus

Faruck Morcos, Marcin Sikora, Mark Alber, Dale Kaiser, and Jesús A. Izaguirre

Pacific Symposium on Biocomputing. Vol. 15. 2010. January, 2010
Development of a five-year mortality model in systemic sclerosis patients by different analytical approaches

L. Beretta, A. Santaniello, F. Cappiello, N.V. Chawla, M.C. Vonk, P.E. Carreira, Y. Allanore, D.A. Popa-Diaconu, M. Cossu, F. Bertolotti, G. Ferraccioli, A. Mazzone, R. Scorza

Clinical & Experimental Rheumatology 28.2 (2010): S18. January, 2010
Network Analysis of Team Structure in the Neonatal Intensive Care Unit

James E. Gray, Darcy A. Davis, DeWayne M. Pursley, Jane E. Smallcomb, Alon Geva, Nitesh V. Chawla

Pediatrics 125.6 (2010): e1460-e1467. January, 2010
Multiscale dynamics of macromolecules using Normal Mode Langevin

Jesús A. Izaguirre, Chris R. Sweet, and Vijay S. Pande

Pacific Symposium On Biocomputing. Vol. 15. 2010. January, 2010

2009

Publication Title Authors Citation Publication Date
Identifying and Evaluating Community Structure in Complex Networks

Karsten Steinhaeuser, Nitesh V. Chawla

Pattern Recognition Letters 31.5 (2010): 413-421. November, 2009
Degree-based graph construction

Hyunju Kim, Zoltán Toroczkai, Péter L Erdős, István Miklós and László A Székely

Journal of Physics A: Mathematical and Theoretical 42.39 (2009): 392001. September, 2009
A Mapping of Drug Space from the Viewpoint of Small Molecule Metabolism

James Corey Adams, Michael J. Keiser, Li Basuino, Henry F. Chambers, Deok-Sun Lee, Olaf G. Wiest, Patricia C. Babbitt

PLoS computational biology 5.8 (2009): e1000474. August, 2009
Gene copy number and malaria biology

Tim J.C. Anderson, Jigar Patel, Michael T. Ferdig

Trends in parasitology 25.7 (2009): 336-343. July, 2009
Understanding Spatial Connectivity of Individuals with Non Uniform Population Density

Pu Wang and Marta C. González

Wang, Pu, and Marta C. González. "Understanding spatial connectivity of individuals with non-uniform population density." Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 367.1901 (2009): 3321-3329. July, 2009
Modeling a Store's Product Space as a Social Network

Troy Raeder, Nitesh V. Chawla

Raeder, Troy, and Nitesh V. Chawla. "Modeling a Store's Product Space as a Social Network." Social Network Analysis and Mining, 2009. ASONAM'09. International Conference on Advances in. IEEE, 2009. July, 2009
Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum

Yang Huang, Stefan Wuchty, Michael T. Ferdig and Teresa M. Przytycka

Huang, Yang, et al. "Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum." Bioinformatics 25.12 (2009): i15-i20. July, 2009
Determination of Specificity Residues in Two Component Systems using Graphlets

F. Morcos, C. Lamanna, N. V. Chawla and J. A. Izaguirre

BIOCOMP. 2009. July, 2009
Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum

John C. Tan, Jigar J. Patel, b, Asako Tan, J. Craig Blain, Tom J. Albert, Neil F. Lobo, Michael T. Ferdig

Tan, John C., et al. "Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum." Genomics 93.6 (2009): 543-550. June, 2009
Mining in a Mobile Environment

Sean McRoskey, Jim Notwell, Nitesh V. Chawla, and Christian Poellabauers

McRoskey, Sean, et al. "Mining in a mobile environment." Proceedings of the Third International Workshop on Knowledge Discovery from Sensor Data. ACM, 2009. June, 2009
Probing the multifactorial basis of Plasmodium falciparum quinine resistance: evidence for a strain-specific contribution of the sodium-proton exchanger PfNHE

Louis J. Nkrumah, Paul M. Riegelhaupt, Pedro Moura, David J. Johnson, Jigar Patel, Karen Hayton, Michael T. Ferdig, Thomas E. Wellems, Myles H. Akabas, David A. Fidock

Nkrumah, Louis J., et al. "Probing the multifactorial basis of Plasmodium falciparum quinine resistance: Evidence for a strain-specific contribution of the sodium-proton exchanger PfNHE." Molecular and biochemical parasitology 165.2 (2009): 122-13 June, 2009
Understanding the Spreading Patterns of Mobile Phones Viruses

Pu Wang, Marta C. González, César A. Hidalgo, Albert-László Barabási

Wang, Pu, et al. "Understanding the spreading patterns of mobile phone viruses." Science 324.5930 (2009): 1071-1076. April, 2009
Countering imbalanced datasets to improve adverse drug event predictive models in labor and delivery

L.M. Taft, R.S. Evans, C.R. Shyu, M.J. Egger, N. Chawla, J.A. Mitchell, S.N. Thornton, B. Bray, M. Varner

Journal of biomedical informatics 42.2 (2009): 356-364. April, 2009
A comprehensive Plasmodium falciparum protein interaction map reveals a distinct architecture of a core interactome

Stefan Wuchty, John H. Adams, and Michael T. Ferdig

Proteomics 9.7 (2009): 1841-1849. April, 2009
Enhancing the Scale-Free Network’s Attack Tolerance

Zehui Qu, Pu Wang, Zhiguang Qin

Qu, Zehui, Pu Wang, and Zhiguang Qin. "Enhancing the Scale-Free Network’s Attack Tolerance." Complex Sciences. Springer Berlin Heidelberg, 2009. 1823-1826. February, 2009
Highbrow omnivorousness on the small screen? Cultural industry systems and patterns of cultural choice in Europe

Omar Lizardo and Sara Skiles

Lizardo, Omar, and Sara Skiles. "Highbrow omnivorousness on the small screen?: Cultural industry systems and patterns of cultural choice in Europe." Poetics 37.1 (2009): 1-23. February, 2009
Inferring protein-protein interactions from multiple protein domain combinations

Simon P. Kanaan, Chengbang Huang, Stefan Wuchty, Danny Z. Chen, Jesús A. Izaguirre

Kanaan, Simon P., et al. "Inferring protein–protein interactions from multiple protein domain combinations." Computational Systems Biology. Humana Press, 2009. 43-59. January, 2009

2008

Publication Title Authors Citation Publication Date
Biomolecular committor probability calculation enabled by processing in network storage

P. Brenner, J.M. Wozniak, D. Thaina, A. Striegel, J.W. Peng, J.A. Izaguirre

Brenner, Paul, et al. "Biomolecular committor probability calculation enabled by processing in network storage." Parallel Computing 34.11 (2008): 652-660. November, 2008
Adaptive copy number evolution in malaria parasites

Shalini Nair, Becky Miller, Marion Barends, Anchalee Jaidee, Jigar Patel, Mayfong Mayxay, Paul Newton, François Nosten, Michael T. Ferdig, Tim J. C. Anderson

Nair, Shalini, et al. "Adaptive copy number evolution in malaria parasites." PLoS genetics 4.10 (2008): e1000243. October, 2008
Predicting individual disease risk based on medical history

Darcy Davis, Nitesh V. Chawla, Nicholas Blumm, Nicholas Christakis, Albert-Laszlo Barabasi

Davis, Darcy A., et al. "Predicting individual disease risk based on medical history." Proceedings of the 17th ACM conference on Information and knowledge management. ACM, 2008. October, 2008
The question of culture consumption and stratification revisited

Omar Lizardo

Lizardo, Omar. "The question of culture consumption and stratification revisited." Sociologica 2.2 (2008): 0-0. September, 2008
Regulatory hotspots in the malaria parasite genome dictate transcriptional variation

Joseph M Gonzales, Jigar J Patel, Napawan Ponmee, Lei Jiang, Asako Tan, Steven P Maher, Stefan Wuchty, Pradipsinh K Rathod, Michael T Ferdig

Gonzales, Joseph M., et al. "Regulatory hotspots in the malaria parasite genome dictate transcriptional variation." PLoS biology 6.9 (2008): e238. September, 2008
Using relaxational dynamics to reduce network congestion

Ana L Pastore y Piontti, Cristian E La Rocca, Zoltán Toroczkai, Lidia A Braunstein, Pablo A Macri and Eduardo López

y Piontti, Ana L. Pastore, et al. "Using relaxational dynamics to reduce network congestion." New Journal of Physics 10.9 (2008): 093007. September, 2008
Cytoprophet: A Cytoscape plug-in for protein and domain interaction networks inference

Faruck Morcos, Charles Lamanna, Marcin Sikora and Jesús Izaguirre

Morcos, Faruck, et al. "Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference." Bioinformatics 24.19 (2008): 2265-2266. July, 2008
Genome-wide compensatory changes accompany drug- selected mutations in the Plasmodium falciparum crt gene

Hongying Jiang, Jigar J. Patel, Ming Yi, Jianbing Mu, Jinhui Ding, Robert Stephens, Roland A. Cooper, Michael T. Ferdig, Xin-zhuan Su

Jiang, Hongying, et al. "Genome-wide compensatory changes accompany drug-selected mutations in the Plasmodium falciparum crt gene." PLoS One 3.6 (2008): e2484. June, 2008
Uncovering Individual and Collective Human Dynamics from Mobile Phone Records

Julián Candia, Marta C González, Pu Wang, Timothy Schoenharl, Greg Madey and Albert-László Barabási

Candia, Julián, et al. "Uncovering individual and collective human dynamics from mobile phone records." Journal of Physics A: Mathematical and Theoretical 41.22 (2008): 224015. June, 2008
Is Modularity the Answer to Evaluating Community Structure in Networks?

Karsten Steinhaeuser, Nitesh V. Chawla

Steinhaeuser, Karsten, and Nitesh V. Chawla. "Is Modularity the Answer to Evaluating Community Structure in Networks?." International workshop and conference on network science (NetSci’08), Norwich Research Park, UK. 2008. June, 2008
Gradient networks

Zoltán Toroczkai, Balázs Kozma, Kevin E Bassler, N W Hengartner and G Korniss

Toroczkai, Zoltan, et al. "Gradient networks." Journal Of Physics A: Mathematical And Theoretical 41.15 (2008): 155103. April, 2008
Normal Mode Partitioning of Langevin Dynamics for Biomolecules

Christopher R. Sweet, Paula Petrone, Vijay S. Pande and Jesús A. Izaguirre

Sweet, Christopher R., et al. "Normal mode partitioning of Langevin dynamics for biomolecules." The Journal of chemical physics 128 (2008): 145101. January, 2008
Community Detection in a Large Real-World Social Network

Karsten Steinhaeuser, Nitesh V. Chawla

Steinhaeuser, Karsten, and Nitesh V. Chawla. "Community detection in a large real-world social network." Social Computing, Behavioral Modeling, and Prediction. Springer US, 2008. 168-175. January, 2008

2007

Publication Title Authors Citation Publication Date
Anomaly detection in mobile communication networks

Alec Pawling, Nitesh V. Chawla, Greg Madey

Pawling, Alec, Nitesh V. Chawla, and Greg Madey. "Anomaly detection in a mobile communication network." Computational and Mathematical Organization Theory 13.4 (2007): 407-422. December, 2007
Quantitative dissection of clone-specific growth rates in cultured malaria parasites

Heather B. Reilly, Hongjian Wang, John A. Steuter, Anastasia M. Marx, Michael T. Ferdig

Reilly, Heather B., et al. "Quantitative dissection of clone-specific growth rates in cultured malaria parasites." International journal for parasitology 37.14 (2007): 1599-1607. December, 2007
Generations, identities and the collective memory of Che Guevara

Jeff A. Larson, Omar Lizardo

Larson, Jeff A., and Omar Lizardo. "Generations, Identities, and the Collective Memory of Che Guevara1." Sociological Forum. Vol. 22. No. 4. Blackwell Publishing Ltd, 2007. October, 2007
From Genes To Organisms Via The Cell: A Problem Solving Environment For Multicellular Development

T. Cickovski, K. Aras, M. Swat, R. M. H. Merks, T. Glimm, H. G. E.Hentschel, M. S. Alber, J. A. Glazier, S. A. Newman, J. A. Izaguirre

Cickovski, Trevor, et al. "From genes to organisms via the cell: a problem-solving environment for multicellular development." Computing in science & engineering 9.4 (2007): 50-60. July, 2007
Introduction: Optimization in networks

Motter AE, Toroczkai Z.

Motter, Adilson E., and Zoltan Toroczkai. "Introduction: Optimization in networks." Chaos: An interdisciplinary journal of nonlinear science 17.2 (2007): 26101. June, 2007
A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-Based Morphogenesis

Nan Chen, James A. Glazier, Jesús A. Izaguirre, Mark S. Alber

Chen, Nan, et al. "A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis." Computer physics communications 176.11 (2007): 670-681. June, 2007
Extreme fluctuations in noisy task- completion landscapes on scale-free networks

H. Guclu, G. Korniss, Z. Toroczkai

Guclu, H., G. Korniss, and Z. Toroczkai. "Extreme fluctuations in noisy task-completion landscapes on scale-free networks." Chaos: An Interdisciplinary Journal of Nonlinear Science 17.2 (2007): 026104-026104. June, 2007
Authentication anomaly detection: a case study on a virtual private network

Michael J. Chapple, Nitesh V. Chawla, Aaron Striegel

Chapple, Michael J., Nitesh Chawla, and Aaron Striegel. "Authentication anomaly detection: A case study on a virtual private network." Proceedings of the 3rd annual ACM workshop on Mining network data. ACM, 2007. June, 2007
Enhanced Situational Awareness: Application of DDDAS Concepts to Emergency and Disaster Management

Gregory R. Madey, Albert-László Barabási, Nitesh V. Chawla, Marta Gonzalez, David Hachen, Brett Lantz, Alec Pawling, Timothy Schoenharl, Gábor Szabó, Pu Wang, Ping Yan

Madey, Gregory R., et al. "Enhanced situational awareness: Application of DDDAS concepts to emergency and disaster management." Computational Science–ICCS 2007. Springer Berlin Heidelberg, 2007. 1090-1097. May, 2007
Proximity networks and epidemics

Zoltán Toroczkai, Hasan Guclub

Toroczkai, Zoltán, and Hasan Guclu. "Proximity networks and epidemics." Physica A: Statistical Mechanics and its Applications 378.1 (2007): 68-75. May, 2007
Network Structure of Protein Folding Pathways

Erzsebet Ravasz, S. Gnanakaran, Zoltan Toroczkai

Ravasz, Erzsebet, S. Gnanakaran, and Zoltan Toroczkai. "Network structure of protein folding pathways." arXiv preprint arXiv:0705.0912 (2007). May, 2007
Plasmodium falciparum Na+/H+ exchanger activity and quinine resistance

Tyler N. Bennett, Jigar Patel, Michael T. Ferdig, Paul D. Roepe

Bennett, Tyler N., et al. "Plasmodium falciparum Na+/H+ exchanger activity and quinine resistance." Molecular and biochemical parasitology 153.1 (2007): 48-58. May, 2007
Structural bottlenecks for communication in networks

Sameet Sreenivasan, Reuven Cohen, Eduardo López, Zoltán Toroczkai, and H. Eugene Stanley

Sreenivasan, Sameet, et al. "Structural bottlenecks for communication in networks." Physical Review E 75.3 (2007): 036105. March, 2007
Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach

Chengbang Huang, Faruck Morcos, Simon P. Kanaan, Stefan Wuchty, Danny Z. Chen, and Jesús A. Izaguirre

Huang, Chengbang, et al. "Predicting protein-protein interactions from protein domains using a set cover approach." IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 4.1 (2007): 78-87. January, 2007
Bayesian Inference of Protein and Domain Interactions Using the Sum-Product Algorithm

Marcin Sikora, Faruck Morcos, Daniel J. Costello, Jr., Jesus A. Izaguirre

Sikora, Marcin, et al. "Bayesian inference of protein and domain interactions using the sum-product algorithm." Proceedings of the 2007 information theory and applications workshop. 2007. January, 2007
Genetic crosses in the apicomplexan parasite Cryptosporidium parvum define recombination parameters

Sultan Tanriverdi, J Craig Blain, Bingbing Deng, Michael T. Ferdig, Giovanni Widmer

Tanriverdi, Sultan, et al. "Genetic crosses in the apicomplexan parasite Cryptosporidium parvum define recombination parameters." Molecular microbiology 63.5 (2007): 1432-1439. January, 2007

2006

Publication Title Authors Citation Publication Date
WIPER: Leveraging the cell phone network for emergency response

Timothy Schoenharl, Ryan Bravo, and Greg Madey

Schoenharl, Tim, Ryan Bravo, and Greg Madey. "WIPER: Leveraging the cell phone network for emergency response." International Journal of Intelligent Control and Systems 11.4 (2006): 209-216. December, 2006
Mutations in transmembrane domains 1, 4 and 9 of the Plasmodium falciparum chloroquine resistance transporter alter susceptibility to chloroquine, quinine and quinidine

Roland A. Cooper, Kristin D. Lane, Bingbing Deng, Jianbing Mu, Jigar J. Patel, Thomas E. Wellems, Xinzhuan Su, Michael T. Ferdig

Cooper, Roland A., et al. "Mutations in transmembrane domains 1, 4 and 9 of the Plasmodium falciparum chloroquine resistance transporter alter susceptibility to chloroquine, quinine and quinidine." Molecular microbiology 63.1 (2007): 270-282. November, 2006
Congestion-gradient driven transport on complex networks

Bogdan Danila, Yong Yu, Samuel Earl, John A. Marsh, Zoltán Toroczkai, and Kevin E. Bassler

Danila, Bogdan, et al. "Congestion-gradient driven transport on complex networks." Physical Review E 74.4 (2006): 046114. October, 2006
How cultural tastes shape personal networks

Omar Lizardo

Lizardo, Omar. "How cultural tastes shape personal networks." American Sociological Review 71.5 (2006): 778-807. October, 2006
Prediction of domain interactions in C. elegans

Faruck Morcos, Mike Boxem, Niels Klitgord, Marc Vidal, and Jesus A. Izaguirre

Morcos, Faruck, et al. "Prediction of Domain Interactions in C. elegans." NIC Workshop 2006 From Computational Biophysics to Systems Biology. September, 2006
Towards Learning-based Sensor Management

Karsten Steinhaeuser, Nitesh V. Chawla and Christian Poellabauer

Steinhaeuser, Karsten, Nitesh V. Chawla, and Christian Poellabauer. "Towards Learning-based Sensor Management." Proc. of Workshop on Tackling Computer Systems Problems with Machine Learning Techniques (SYSML), SIGMETRICS. 2004. June, 2006
The Role of Information and Influence in Social Networks

Michael Davern, David S. Hachen Jr.

Davern, Michael, and David S. Hachen. "The role of information and influence in social networks." American Journal of Economics and Sociology 65.2 (2006): 269-293. May, 2006